Index

A

assign_sex() (in module scanpy_plus.pp.assign_sex)

C

cellbender() (in module scanpy_plus.pp.cellbender)

cellcycle_corr() (in module scanpy_plus.pp.cellcycle_corr)

D

describe() (in module scanpy_plus.describe)

G

get_from_raw() (in module scanpy_plus.get_from_raw) get_results() (scanpy_plus.tl.gsea.Gsea method)

getdb() (scanpy_plus.tl.gsea.Gsea method) Gsea (class in scanpy_plus.tl.gsea)

H

histplot() (in module scanpy_plus.pl.histplot)

I

is_outlier() (in module scanpy_plus.is_outlier)

M

module scanpy_plus.describe scanpy_plus.get_from_raw scanpy_plus.globimport scanpy_plus.io scanpy_plus.io.adata_split scanpy_plus.io.boot scanpy_plus.is_outlier scanpy_plus.pl scanpy_plus.pl.histplot scanpy_plus.pl.pca_correlation scanpy_plus.pl.perma_plot scanpy_plus.pl.plotly_umap scanpy_plus.pl.ridgeplot scanpy_plus.pl.splitplot scanpy_plus.pl.splitscatter scanpy_plus.pl.umap3dPlotting scanpy_plus.pl.umap_allobs scanpy_plus.pl.umap_grid scanpy_plus.pl.umap_markers scanpy_plus.pp scanpy_plus.pp.assign_sex scanpy_plus.pp.cellbender scanpy_plus.pp.cellcycle_corr scanpy_plus.tl.gsea scanpy_plus.tl.rankobs scanpy_plus.tl.tryumap

P

pca_correlation() (in module scanpy_plus.pl.pca_correlation) perma_plot() (in module scanpy_plus.pl.perma_plot)

plotly_umap() (in module scanpy_plus.pl.plotly_umap) pull() (in module scanpy_plus.io.boot) push() (in module scanpy_plus.io.boot)

R

rankobs() (in module scanpy_plus.tl.rankobs) read_adata_split() (in module scanpy_plus.io.adata_split)

ridgeplot() (in module scanpy_plus.pl.ridgeplot) run_gsea() (scanpy_plus.tl.gsea.Gsea method)

S

scanpy_plus.describe module scanpy_plus.get_from_raw module scanpy_plus.globimport module scanpy_plus.io module scanpy_plus.io.adata_split module scanpy_plus.io.boot module scanpy_plus.is_outlier module scanpy_plus.pl module scanpy_plus.pl.histplot module scanpy_plus.pl.pca_correlation module scanpy_plus.pl.perma_plot module scanpy_plus.pl.plotly_umap module scanpy_plus.pl.ridgeplot module scanpy_plus.pl.splitplot module

scanpy_plus.pl.splitscatter module scanpy_plus.pl.umap3dPlotting module scanpy_plus.pl.umap_allobs module scanpy_plus.pl.umap_grid module scanpy_plus.pl.umap_markers module scanpy_plus.pp module scanpy_plus.pp.assign_sex module scanpy_plus.pp.cellbender module scanpy_plus.pp.cellcycle_corr module scanpy_plus.tl.gsea module scanpy_plus.tl.rankobs module scanpy_plus.tl.tryumap module splitplot() (in module scanpy_plus.pl.splitplot) splitscatter() (in module scanpy_plus.pl.splitscatter)

T

tryumap() (in module scanpy_plus.tl.tryumap)

U

umap3dPlotting() (in module scanpy_plus.pl.umap3dPlotting) umap_allobs() (in module scanpy_plus.pl.umap_allobs)

umap_grid() (in module scanpy_plus.pl.umap_grid) umap_markers() (in module scanpy_plus.pl.umap_markers)

W

write_adata_split() (in module scanpy_plus.io.adata_split)