scanpy_plus.pl.pca_correlation module

scanpy_plus.pl.pca_correlation.pca_correlation(data, obsm_pca='X_pca', fill_na=0, figsize=(25, 25), fontsize=0.75, clustermap=True, **kwargs)

Calculates correlation of each PCs to obs data. Automatically removes columns that are string or category.

Parameters: data: anndata object obsm_pca: The name of obsm_pca to consider. eg. X_pca, X_umap, X_pca_wnn

Returns: pandas dataframe