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scanpy_plus v1.0.0 documentation
scanpy_plus v1.0.0 documentation

Contents:

  • scanpy_plus.tl package
    • scanpy_plus.tl.gsea module
    • scanpy_plus.tl.map_to_dahlin module
    • scanpy_plus.tl.rankobs module
    • scanpy_plus.tl.run_scvi module
    • scanpy_plus.tl.tryumap module
  • scanpy_plus.pp package
    • scanpy_plus.pp.assign_sex module
    • scanpy_plus.pp.cellbender module
    • scanpy_plus.pp.cellcycle_corr module
  • scanpy_plus.io package
    • scanpy_plus.io.adata_split module
    • scanpy_plus.io.boot module
  • scanpy_plus.pl package
    • scanpy_plus.pl.histplot module
    • scanpy_plus.pl.pca_correlation module
    • scanpy_plus.pl.perma_plot module
    • scanpy_plus.pl.plotly_umap module
    • scanpy_plus.pl.ridgeplot module
    • scanpy_plus.pl.splitplot module
    • scanpy_plus.pl.splitscatter module
    • scanpy_plus.pl.umap3dPlotting module
    • scanpy_plus.pl.umap_allobs module
    • scanpy_plus.pl.umap_grid module
    • scanpy_plus.pl.umap_markers module
  • scanpy_plus.data package
    • scanpy_plus.data.load module
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scanpy_plus.tl package¶

Submodules¶

  • scanpy_plus.tl.gsea module
    • Gsea
      • Gsea.get_results()
      • Gsea.getdb()
      • Gsea.run_gsea()
  • scanpy_plus.tl.map_to_dahlin module
  • scanpy_plus.tl.rankobs module
    • rankobs()
  • scanpy_plus.tl.run_scvi module
  • scanpy_plus.tl.tryumap module
    • tryumap()
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scanpy_plus.tl.gsea module
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