scanpy_plus.pl.umap_allobs module

scanpy_plus.pl.umap_allobs.umap_allobs(data, wanted_obs, cmap, unwanted_obs=['predicted_doublet', 'xist_bin', 'Ygene_bin'], ncols=4, plotw=7, ploth=6)

Plot umap of all obs If wanted_obs is not defined: Plot all obs sans unwanted_obs

wanted_obs: list. list of obs column names cmap: matplotlib.colors.LinearSegmentedColormap unwanted_obs: Some obs like True,False will fail. Use unwanted_obs to remove them out ncols: number of cols plotw: plot size for a single subplot ploth: plot height for a single subplot

Runs sc.pl.umap() returns none