scanpy_plus.tl.rankobs module

scanpy_plus.tl.rankobs.rankobs(adata, obs=['total_counts', 'n_genes_by_counts', 'doublet_score', 'pct_counts_mt'], ascending=[True, True, False, False], percentile=True)

Rank observations.

Parameters:

• adata (anndata.AnnData) – Annotated data matrix.

• obs (list of str) – List of observation column names to be ranked.

• ascending (bool, optional) – Sort in ascending order (default is True).

• percentile (bool, optional) – If True, compute rankings in percentiles (default is False).

Returns:

A DataFrame with ranked observation values.

Return type:

pd.DataFrame